- Mac Os XContents
- Running the installer (on macOS or Linux)
- Advanced usage
The FSL software suite requires the X11 windowing system - please install XQuartz before continuing with the FSL installation. The FSL install script will warn you if it is unable to find X11 on your computer.
Yosemite (10.10)+Recent versions of macOS are known to have problems with FSLView, often after major OS updates have been applied, if you experience errors referencing '/usr/X11R6' try re-installing XQuartz and failing this try: sudo ln -s /opt/X11 /usr/X11R6 ; sudo ln -s /opt/X11 /usr/X11
The fslinstaller.py script carries out the installation of FSL, configuring your environment to enable you to run FSL from a terminal (/Applications/Utilities/Terminal.app) window.
Administrative privileges may be required Eclipse c++ for mac os sierra.
Installation into certain folders on your computer (e.g. the default, /usr/local) may require administrative privileges. If this is the case, the installer will attempt to gain these privileges through the use of the sudo command, which will require you to enter your password for verification. If you don't have permission to use sudo (an administration account on macOS) then the installer will fail and will need to either install into a folder belonging to your user or to run the installer as the root user. Should you install as root see the configuring your account for FSL section for details on how to use the installer to setup your user account for FSL.
Mac OS Sierra Download 10.12: —————— File name: Install macOS Sierra.zip File size: 4.44GB Version: macOS Sierra —————— Mac OS Sierra Direct Download: Direct Download. Mac OS Sierra Torrent Download: Download. Note: Let Us Know In comments if any link is not working, We will update ASAP. MacOS Sierra Overview. Jan 24, 2018 Download Mac OS X 10.12 MacOS Sierra.ISO – Download Sierra.DMG installer – Hackintosh – VMWare + Virtual box images -MacOS Sierra Torrent download – Without using Apple Store ID. MacOS Sierra has been released officially. However, in this topic, we share two methods to download and get MacOS Sierra. That way of downloading Mac OS X updates and new apps was introduced with Snow Leopard and means that anyone with a Mac running Mac OS X 10.5 Leopard or earlier can’t actually access the Mac App. VisualSFM installer script for OS X Mavericks. Here's a quick guide on how to use the installer. Get the installer from the github page where it says 'Download ZIP'. Since you are here= Go to your Downloads folder and you should see a directory called 'VisualSFMOSXMavericksInstaller-master'.
The installer requires access to the internet to be able to download the FSL software appropriate for your platform and runs from within a terminal session, so you need to open a terminal:
- Linux (Centos 7)
- The Terminal application can be found in Applications > Utilities > Terminal menu
- macOS
- The Terminal application can be found in /Applications/Utilities
In the terminal change to the folder containing the fslinstaller.py file and run it with python; assuming that you wish to install into /usr/local (the default) then just press the Return key when the installer asks where to install to. For example if you downloaded to your Downloads folder:
The installer requires python 2.x to run which is the default on macOS and Centos 6 & 7, if you have installed python version 3 and made it the default when you run python then you will need to run it with a python 2 version, you can often find this as:
Jul 02, 2020 The macOS installer doesn't see your disk or can't install on it. For example, the installer might say that your disk isn't formatted correctly, isn't using a GUID partition scheme, contains a newer version of the operating system, or can't be used to start up your computer. The above instructions worked for me with OS X 10.11.5 with the one caveat that I also had to execute the following command, which required a reboot.
- /usr/bin/python
- python27
- python2.7
- python26
- python2.6
Once the install completes Linux users should log out (System (top right icon) > Log out) and log back in to complete the FSL setup. If you are accessing the Linux computer via a remote SSH session then close the SSH session and re-login. Apple macOS users should open a new terminal window to begin using FSL.
if you use Mathworks' MATLAB it will configure your startup.m file to allow you to use the FSL MATLAB functions and on macOS platforms it will also install FSLEyes and FSLView into /Applications.
Advanced Options
The installer has some advanced options which, amongst other things, allows you to:
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- customise the FSL installation location.
- automate the FSL installation - this is useful if you would like to call the installer from an automated script.
Type python fslinstaller.py -h for a list of all available options.
Test that the environment and command line tools are set up correctly by doing the following:
- Start a new Terminal session (File > Open Terminal under Linux/Gnome, Shell > New Window on macOS)
- Check that your environment is correct by typing: This should display the name of the directory that you installed FSL in.
- Check that your path is correct by typing: which should display a line like: (although the version number might be different).
In general, to run the FSL tools from the command line (within a terminal) you need to enter the program name in lower case (e.g. bet). Typing a command on its own (without any arguments or options) gives you a help message for that command.
A more complete test of the FSL installation can be run, if desired, by using the testing and evaluation suite FEEDS.
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To run a GUI version of a program you can either type its capitalised name with an additional '_gui' appended in the terminal (e.g. Bet_gui), or you can start the main FSL GUI by just typing fsl.
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If this doesn't work the see the FAQ for how to go about fixing this, otherwise you are ready to run FSL.
Using FSL MATLAB libraries
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The fslinstaller script sets this up for you so you should not need to do this. However, if the installer cannot configure MATLAB for some reason you may need to do this by hand.
FSL ships with several MATLAB scripts for loading NIFTI files. These libraries are dependant on FSL environment variables which aren't set in the macOS desktop environment, so won't run in a MATLAB session started from the /Applications/MATLAB.app launcher. You can configure MATLAB by adding the following to your ~/matlab/startup.m file (create it if it doesn't already exist) (assuming FSL is installed in /usr/local!):